Python Packages

I was tasked to come up with a list of all the Python packages we need for this new server we are setting up. Sharing the list below, hoping you’ll find them useful.

Cheers!

Essentials

• ipython notebook (https://ipython.org/notebook.html)
• matplotlib (http://matplotlib.org/)
• numpy (http://www.numpy.org/)
• scipy (https://www.scipy.org/)
• pandas (http://pandas.pydata.org/)
• rpy2 (http://rpy2.bitbucket.org/)

Networks

• networkx (https://networkx.github.io/)
• graph-tool (https://graph-tool.skewed.de/)
• python-igraph (http://igraph.org/python/)

Stats and ML/AI

• scikit-learn (http://scikit-learn.org/)
• h2o-ai python (https://pypi.python.org/pypi/h2o/)
• tensorflow (https://www.tensorflow.org/)
• pybrain (http://pybrain.org/)
• theano (http://deeplearning.net/software/theano/)
• statsmodels (http://statsmodels.sourceforge.net/)

Plotting

• seaborn (https://web.stanford.edu/~mwaskom/software/seaborn/)
• d3py (https://github.com/mikedewar/d3py)
• ggplot (http://ggplot.yhathq.com/)
• plotly (https://plot.ly/python/)

Data and Database Access

• json (https://docs.python.org/2/library/json.html)
• sqlalchemy (http://www.sqlalchemy.org/)
• psycopg2 (http://initd.org/psycopg/)
• csvkit (https://pypi.python.org/pypi/csvkit)
• sqlite3 (https://docs.python.org/2/library/sqlite3.html)
• pytables (http://www.pytables.org/)

GIS / Maps / Reading Shapefiles

• osgeo (gdal) (https://pypi.python.org/pypi/GDAL/)
• shapely (https://pypi.python.org/pypi/Shapely)
• folium (https://pypi.python.org/pypi/folium)
• basemap (http://matplotlib.org/basemap/)
• fiona (https://pypi.python.org/pypi/Fiona)